You shouldn't have to rename any files in the ini or otherwise (DROD automagically looks for both protected and unprotected files), but unfortunately FMOD doesn't support playing midi files in Linux at all.
(I've posted in their forum about this.)
The midi files won't play in any normal midi player because they've been protected, so they'll only be usable with DROD. I'll have to discuss this with Erik, but we may be able to give you unprotected ones, or I could maybe hack pmidi to play the protected files. (Either way you'd have to control the playback yourself, of course.)
- Gerry